IL_5NRG_102

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAGAA*UUCAUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|C|2324
5NRG|1|X|A|2325
5NRG|1|X|G|2326
5NRG|1|X|A|2327
5NRG|1|X|A|2328
*
5NRG|1|X|U|2342
5NRG|1|X|U|2343
5NRG|1|X|C|2344
5NRG|1|X|A|2345
5NRG|1|X|U|2346
5NRG|1|X|A|2347
5NRG|1|X|G|2348

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain Y

5S ribosomal RNA; 5S rRNA