IL_5NRG_106

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GUAGG*CACAC

Length

10 nucleotides

Bulged bases

5NRG|1|X|C|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_106 not in the Motif Atlas

Homologous match to IL_4WF9_122

Geometric discrepancy: 0.2536

The information below is about IL_4WF9_122

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67780.1

Basepair signature

cWW-cSH-L-R-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5NRG|1|X|G|1476
5NRG|1|X|U|1477
5NRG|1|X|A|1478
5NRG|1|X|G|1479
5NRG|1|X|G|1480
*
5NRG|1|X|C|1604
5NRG|1|X|A|1605
5NRG|1|X|C|1606
5NRG|1|X|A|1607
5NRG|1|X|C|1608

Current chains

Chain X

23S ribosomal RNA

Nearby chains