IL_5NRG_108

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_108 not in the Motif Atlas

Homologous match to IL_4WF9_074

Geometric discrepancy: 0.1847

The information below is about IL_4WF9_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NRG|1|X|A|1883
5NRG|1|X|G|1884
5NRG|1|X|G|1885
5NRG|1|X|A|1886
5NRG|1|X|G|1887
*
5NRG|1|X|C|1909
5NRG|1|X|G|1910
5NRG|1|X|A|1911
5NRG|1|X|A|1912
5NRG|1|X|U|1913

Current chains

Chain X

23S ribosomal RNA

Nearby chains