IL_5NS4_002

3D structure

PDB id

5NS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of Cy3 cyanine fluorophores stacked onto the end of double-stranded RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NS4_002 not in the Motif Atlas

Geometric match to IL_5NS3_002

Geometric discrepancy: 0.0317

The information below is about IL_5NS3_002

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.12

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

12

Unit IDs

5NS4|1|C|A|34
5NS4|1|C|C|35
5NS4|1|C|C|36
5NS4|1|C|C|37
5NS4|1|C|C|38
*
5NS4|1|C|G|44
5NS4|1|C|A|45
5NS4|1|C|A|46
5NS4|1|C|C|47
5NS4|1|C|U|48

Current chains

Chain C

RNA (34-MER)

Nearby chains

Chain A

50S ribosomal protein L5

Chain B

50S ribosomal protein L5

Chain D

RNA (34-MER)