3D structure

PDB id
5NWY (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NWY_023 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.1205
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

5NWY|1|0|G|450
5NWY|1|0|A|451
5NWY|1|0|A|452
5NWY|1|0|G|453
5NWY|1|0|G|454
5NWY|1|0|G|455
*
5NWY|1|0|C|477
5NWY|1|0|A|478
5NWY|1|0|U|479
5NWY|1|0|U|480
5NWY|1|0|G|481
5NWY|1|0|A|482
5NWY|1|0|C|483

Current chains

Chain 0
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S16

Coloring options:


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