IL_5NWY_033
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGAG*UGGA
- Length
- 9 nucleotides
- Bulged bases
- 5NWY|1|0|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NWY_033 not in the Motif Atlas
- Homologous match to IL_5J7L_033
- Geometric discrepancy: 0.0622
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5NWY|1|0|U|662
5NWY|1|0|A|663
5NWY|1|0|G|664
5NWY|1|0|A|665
5NWY|1|0|G|666
*
5NWY|1|0|U|740
5NWY|1|0|G|741
5NWY|1|0|G|742
5NWY|1|0|A|743
Current chains
- Chain 0
- 16S rRNA
Nearby chains
- Chain 5
- 30S ribosomal protein S6
- Chain E
- 30S ribosomal protein S15
- Chain H
- 30S ribosomal protein S18
- Chain K
- 30S ribosomal protein S21
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