IL_5NWY_036

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_036 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0528

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5NWY|1|0|G|774
5NWY|1|0|G|775
5NWY|1|0|G|776
5NWY|1|0|A|777
5NWY|1|0|G|778
*
5NWY|1|0|U|804
5NWY|1|0|C|805

Current chains

Chain 0

16S rRNA

Nearby chains

Chain A

30S ribosomal protein S11

Chain N

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L2