IL_5NWY_047

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

5NWY|1|0|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_047 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.2982

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5NWY|1|0|C|1051
5NWY|1|0|U|1052
5NWY|1|0|G|1053
5NWY|1|0|C|1054
5NWY|1|0|A|1055
5NWY|1|0|U|1056
*
5NWY|1|0|A|1204
5NWY|1|0|U|1205
5NWY|1|0|G|1206
5NWY|1|0|G|1207

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S3

Chain 9

30S ribosomal protein S10

Chain D

30S ribosomal protein S14