IL_5NWY_088

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

5NWY|1|N|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_088 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.0944

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5NWY|1|N|A|844
5NWY|1|N|A|845
5NWY|1|N|U|846
5NWY|1|N|U|847
*
5NWY|1|N|A|933
5NWY|1|N|U|934

Current chains

Chain N

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L30