IL_5NWY_118

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5NWY|1|N|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_118 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1087

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5NWY|1|N|G|1432
5NWY|1|N|A|1433
5NWY|1|N|A|1434
5NWY|1|N|G|1435
*
5NWY|1|N|C|1557
5NWY|1|N|C|1558
5NWY|1|N|U|1559
5NWY|1|N|G|1560
5NWY|1|N|C|1561

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2