IL_5NWY_119

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5NWY|1|N|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_119 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5NWY|1|N|C|1437
5NWY|1|N|U|1438
5NWY|1|N|A|1439
5NWY|1|N|U|1440
*
5NWY|1|N|A|1551
5NWY|1|N|A|1552
5NWY|1|N|A|1553
5NWY|1|N|U|1554
5NWY|1|N|G|1555

Current chains

Chain N

23S rRNA

Nearby chains