IL_5NWY_122

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_122 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NWY|1|N|U|1474
5NWY|1|N|G|1475
5NWY|1|N|U|1476
5NWY|1|N|A|1477
5NWY|1|N|G|1478
*
5NWY|1|N|U|1513
5NWY|1|N|G|1514
5NWY|1|N|A|1515
5NWY|1|N|G|1516
5NWY|1|N|G|1517

Current chains

Chain N

23S rRNA

Nearby chains