IL_5NWY_180
3D structure
- PDB id
- 5NWY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NWY_180 not in the Motif Atlas
- Geometric match to IL_5J7L_358
- Geometric discrepancy: 0.1287
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5NWY|1|O|A|34
5NWY|1|O|C|35
5NWY|1|O|C|36
5NWY|1|O|C|37
5NWY|1|O|C|38
*
5NWY|1|O|G|44
5NWY|1|O|A|45
5NWY|1|O|A|46
5NWY|1|O|C|47
5NWY|1|O|U|48
Current chains
- Chain O
- 5S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L31
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L5
- Chain b
- 50S ribosomal protein L18
Coloring options: