IL_5NWY_187

3D structure

PDB id

5NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NWY_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0941

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5NWY|1|N|U|1851
5NWY|1|N|U|1852
5NWY|1|N|A|1853
5NWY|1|N|A|1854
5NWY|1|N|U|1855
5NWY|1|N|U|1856
5NWY|1|N|G|1857
5NWY|1|N|A|1858
5NWY|1|N|U|1859
5NWY|1|N|G|1860
*
5NWY|1|N|U|1882
5NWY|1|N|U|1883
5NWY|1|N|G|1884
5NWY|1|N|A|1885
5NWY|1|N|U|1886
5NWY|1|N|C|1887
5NWY|1|N|G|1888
5NWY|1|N|A|1889
5NWY|1|N|A|1890
5NWY|1|N|G|1891

Current chains

Chain N

23S rRNA

Nearby chains