IL_5O2R_057

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_057 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2702

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5O2R|1|A|C|1526
5O2R|1|A|G|1527
5O2R|1|A|A|1528
5O2R|1|A|G|1529
5O2R|1|A|G|1530
*
5O2R|1|A|C|1541
5O2R|1|A|U|1542
5O2R|1|A|G|1543
5O2R|1|A|A|1544
5O2R|1|A|A|1545
5O2R|1|A|G|1546

Current chains

Chain A

23S ribosomal RNA

Nearby chains