IL_5O2R_095

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_095 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1305

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5O2R|1|A|C|2652
5O2R|1|A|U|2653
5O2R|1|A|A|2654
5O2R|1|A|G|2655
5O2R|1|A|U|2656
5O2R|1|A|A|2657
5O2R|1|A|C|2658
*
5O2R|1|A|G|2663
5O2R|1|A|G|2664
5O2R|1|A|A|2665
5O2R|1|A|C|2666
5O2R|1|A|C|2667
5O2R|1|A|G|2668

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6