IL_5O2R_121

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5O2R|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_121 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1512

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5O2R|1|a|G|147
5O2R|1|a|G|148
5O2R|1|a|A|149
5O2R|1|a|U|150
5O2R|1|a|A|151
5O2R|1|a|A|152
5O2R|1|a|C|153
*
5O2R|1|a|G|168
5O2R|1|a|C|169
5O2R|1|a|U|170
5O2R|1|a|A|171
5O2R|1|a|A|172
5O2R|1|a|U|173
5O2R|1|a|A|174
5O2R|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20