IL_5O2R_123
3D structure
- PDB id
- 5O2R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 5O2R|1|a|U|244, 5O2R|1|a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O2R_123 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.1176
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5O2R|1|a|G|242
5O2R|1|a|A|243
5O2R|1|a|U|244
5O2R|1|a|U|245
5O2R|1|a|A|246
5O2R|1|a|G|247
*
5O2R|1|a|C|277
5O2R|1|a|G|278
5O2R|1|a|A|279
5O2R|1|a|C|280
5O2R|1|a|G|281
5O2R|1|a|A|282
5O2R|1|a|U|283
5O2R|1|a|C|284
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: