IL_5O2R_177

3D structure

PDB id

5O2R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O2R_177 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1225

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5O2R|1|A|U|1851
5O2R|1|A|U|1852
5O2R|1|A|A|1853
5O2R|1|A|A|1854
5O2R|1|A|U|1855
5O2R|1|A|U|1856
5O2R|1|A|G|1857
5O2R|1|A|A|1858
5O2R|1|A|U|1859
5O2R|1|A|G|1860
*
5O2R|1|A|U|1882
5O2R|1|A|U|1883
5O2R|1|A|G|1884
5O2R|1|A|A|1885
5O2R|1|A|U|1886
5O2R|1|A|C|1887
5O2R|1|A|G|1888
5O2R|1|A|A|1889
5O2R|1|A|A|1890
5O2R|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains