IL_5O5J_011

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

5O5J|1|A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5O5J|1|A|G|144
5O5J|1|A|G|145
5O5J|1|A|A|146
5O5J|1|A|U|147
5O5J|1|A|A|148
5O5J|1|A|A|149
5O5J|1|A|G|150
*
5O5J|1|A|U|165
5O5J|1|A|C|166
5O5J|1|A|U|167
5O5J|1|A|A|168
5O5J|1|A|A|169
5O5J|1|A|U|170
5O5J|1|A|A|171
5O5J|1|A|C|172

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20