IL_5O5J_036

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_036 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1021

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5O5J|1|A|C|759
5O5J|1|A|G|760
5O5J|1|A|A|761
5O5J|1|A|A|762
5O5J|1|A|C|763
*
5O5J|1|A|G|779
5O5J|1|A|G|780
5O5J|1|A|U|781
5O5J|1|A|A|782
5O5J|1|A|G|783

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S11