IL_5O5J_040

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5O5J|1|A|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_040 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1213

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5O5J|1|A|G|915
5O5J|1|A|C|916
5O5J|1|A|A|917
*
5O5J|1|A|U|1363
5O5J|1|A|U|1364
5O5J|1|A|C|1365
5O5J|1|A|C|1366
5O5J|1|A|C|1367

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain W

tRNA-Phe anticodon stem