IL_5O5J_045

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5O5J|1|A|C|1034

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_045 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1029

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

5O5J|1|A|U|1032
5O5J|1|A|G|1033
5O5J|1|A|C|1034
5O5J|1|A|A|1035
5O5J|1|A|U|1036
*
5O5J|1|A|A|1185
5O5J|1|A|U|1186
5O5J|1|A|G|1187

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z