IL_5O5J_055

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_055 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1154

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5O5J|1|A|C|1285
5O5J|1|A|G|1286
5O5J|1|A|G|1287
5O5J|1|A|A|1288
5O5J|1|A|U|1289
5O5J|1|A|C|1290
*
5O5J|1|A|G|1311
5O5J|1|A|U|1312
5O5J|1|A|G|1313
5O5J|1|A|A|1314
5O5J|1|A|A|1315
5O5J|1|A|G|1316

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13