IL_5O5J_056

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5O5J|1|A|C|1383, 5O5J|1|A|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_056 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2079

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5O5J|1|A|C|1382
5O5J|1|A|C|1383
5O5J|1|A|G|1384
*
5O5J|1|A|C|1485
5O5J|1|A|A|1486
5O5J|1|A|A|1487
5O5J|1|A|G|1488

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Conserved domain protein

Chain W

tRNA-Phe anticodon stem

Chain X

mRNA fragment