IL_5O5J_057
3D structure
- PDB id
- 5O5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O5J_057 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1234
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5O5J|1|A|G|1384
5O5J|1|A|C|1385
5O5J|1|A|C|1386
5O5J|1|A|C|1387
*
5O5J|1|A|G|1481
5O5J|1|A|U|1482
5O5J|1|A|A|1483
5O5J|1|A|A|1484
5O5J|1|A|C|1485
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Conserved domain protein
- Chain L
- 30S ribosomal protein S12
- Chain W
- tRNA-Phe anticodon stem
- Chain X
- mRNA fragment
Coloring options: