IL_5O5J_059

3D structure

PDB id

5O5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O5J_059 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.3402

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5O5J|1|A|C|1390
5O5J|1|A|A|1391
5O5J|1|A|C|1392
*
5O5J|1|A|G|1475
5O5J|1|A|A|1476
5O5J|1|A|A|1477
5O5J|1|A|G|1478

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Conserved domain protein

Chain L

30S ribosomal protein S12