IL_5O60_040

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

5O60|1|A|C|1260, 5O60|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_040 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0937

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5O60|1|A|C|1136
5O60|1|A|U|1137
5O60|1|A|A|1138
5O60|1|A|A|1139
5O60|1|A|G|1140
5O60|1|A|U|1141
5O60|1|A|G|1142
*
5O60|1|A|C|1258
5O60|1|A|U|1259
5O60|1|A|C|1260
5O60|1|A|A|1261
5O60|1|A|A|1262
5O60|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36