IL_5O60_045

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5O60|1|A|A|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_045 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.2409

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5O60|1|A|G|1205
5O60|1|A|A|1206
5O60|1|A|G|1207
5O60|1|A|U|1208
5O60|1|A|G|1209
*
5O60|1|A|C|1218
5O60|1|A|U|1219
5O60|1|A|C|1220

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36