IL_5O60_065

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_065 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3644

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5O60|1|A|C|1694
5O60|1|A|U|1695
5O60|1|A|G|1696
5O60|1|A|U|1697
5O60|1|A|A|1698
5O60|1|A|G|1699
*
5O60|1|A|U|1735
5O60|1|A|G|1736
5O60|1|A|A|1737
5O60|1|A|G|1738
5O60|1|A|A|1739
5O60|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains