IL_5O60_073

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5O60|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_073 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0839

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5O60|1|A|C|1904
5O60|1|A|G|1905
5O60|1|A|U|1906
5O60|1|A|A|1907
5O60|1|A|A|1908
5O60|1|A|C|1909
*
5O60|1|A|G|1914
5O60|1|A|G|1915
5O60|1|A|A|1916
5O60|1|A|G|1917
5O60|1|A|A|1918
5O60|1|A|A|1919
5O60|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2