IL_5O60_075

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGUAAG*CCCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_075 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.213

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5O60|1|A|U|1937
5O60|1|A|G|1938
5O60|1|A|U|1939
5O60|1|A|A|1940
5O60|1|A|A|1941
5O60|1|A|G|1942
*
5O60|1|A|C|1952
5O60|1|A|C|1953
5O60|1|A|C|1954
5O60|1|A|A|1955
5O60|1|A|A|1956
5O60|1|A|G|1957

Current chains

Chain A

23S rRNA

Nearby chains