IL_5O60_083

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_083 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2908

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5O60|1|A|A|2073
5O60|1|A|G|2074
5O60|1|A|G|2075
5O60|1|A|A|2076
5O60|1|A|C|2077
5O60|1|A|C|2078
*
5O60|1|A|G|2105
5O60|1|A|A|2106
5O60|1|A|G|2107
5O60|1|A|A|2108
5O60|1|A|A|2109
5O60|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains