IL_5O60_086
3D structure
- PDB id
- 5O60 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 5O60|1|A|A|2162, 5O60|1|A|U|2168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5O60_086 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1457
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5O60|1|A|C|2158
5O60|1|A|G|2159
5O60|1|A|A|2160
5O60|1|A|A|2161
5O60|1|A|A|2162
5O60|1|A|U|2163
5O60|1|A|U|2164
5O60|1|A|C|2165
5O60|1|A|C|2166
5O60|1|A|U|2167
5O60|1|A|U|2168
5O60|1|A|G|2169
*
5O60|1|A|C|2185
5O60|1|A|C|2186
5O60|1|A|U|2187
5O60|1|A|G|2188
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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