IL_5O60_093

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UUUGUGUAGGAUAGGUG*CACUCUGA

Length

25 nucleotides

Bulged bases

5O60|1|A|U|2334, 5O60|1|A|G|2339, 5O60|1|A|U|2341, 5O60|1|A|U|2403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_093 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.3026

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5O60|1|A|U|2330
5O60|1|A|U|2331
5O60|1|A|U|2332
5O60|1|A|G|2333
5O60|1|A|U|2334
5O60|1|A|G|2335
5O60|1|A|U|2336
5O60|1|A|A|2337
5O60|1|A|G|2338
5O60|1|A|G|2339
5O60|1|A|A|2340
5O60|1|A|U|2341
5O60|1|A|A|2342
5O60|1|A|G|2343
5O60|1|A|G|2344
5O60|1|A|U|2345
5O60|1|A|G|2346
*
5O60|1|A|C|2398
5O60|1|A|A|2399
5O60|1|A|C|2400
5O60|1|A|U|2401
5O60|1|A|C|2402
5O60|1|A|U|2403
5O60|1|A|G|2404
5O60|1|A|A|2405

Current chains

Chain A

23S rRNA

Nearby chains