IL_5O60_103

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5O60|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_103 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1141

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

5O60|1|A|A|2683
5O60|1|A|U|2684
5O60|1|A|C|2685
*
5O60|1|A|G|2713
5O60|1|A|G|2714
5O60|1|A|U|2715
5O60|1|A|U|2716
5O60|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain N

50S ribosomal protein L16