IL_5O60_127

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

5O60|1|A|A|1011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O60_127 not in the Motif Atlas

Geometric match to IL_8C3A_008

Geometric discrepancy: 0.2518

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5O60|1|A|G|996
5O60|1|A|G|997
5O60|1|A|G|998
*
5O60|1|A|U|1009
5O60|1|A|U|1010
5O60|1|A|A|1011
5O60|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L25