IL_5O61_034

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_034 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.2929

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5O61|1|A|C|991
5O61|1|A|C|992
5O61|1|A|G|993
5O61|1|A|A|994
5O61|1|A|U|995
5O61|1|A|G|996
*
5O61|1|A|C|1012
5O61|1|A|U|1013
5O61|1|A|G|1014
5O61|1|A|A|1015
5O61|1|A|C|1016
5O61|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25