3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
GGAAAAG*CGAUAAUGUAGCGGGGC
Length
24 nucleotides
Bulged bases
5O61|1|A|U|1248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5O61_042 not in the Motif Atlas
Homologous match to IL_5J7L_281
Geometric discrepancy: 0.1739
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5O61|1|A|G|1142
5O61|1|A|G|1143
5O61|1|A|A|1144
5O61|1|A|A|1145
5O61|1|A|A|1146
5O61|1|A|A|1147
5O61|1|A|G|1148
*
5O61|1|A|C|1242
5O61|1|A|G|1243
5O61|1|A|A|1244
5O61|1|A|U|1245
5O61|1|A|A|1246
5O61|1|A|A|1247
5O61|1|A|U|1248
5O61|1|A|G|1249
5O61|1|A|U|1250
5O61|1|A|A|1251
5O61|1|A|G|1252
5O61|1|A|C|1253
5O61|1|A|G|1254
5O61|1|A|G|1255
5O61|1|A|G|1256
5O61|1|A|G|1257
5O61|1|A|C|1258

Current chains

Chain A
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein bL37
Chain B
5S ribosomal RNA; 5S rRNA
Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L13
Chain N
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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