IL_5O61_072

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_072 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0732

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|1884
5O61|1|A|G|1885
5O61|1|A|A|1886
5O61|1|A|A|1887
5O61|1|A|C|1888
5O61|1|A|U|1889
5O61|1|A|C|1890
5O61|1|A|G|1891
5O61|1|A|G|1892
*
5O61|1|A|C|2214
5O61|1|A|U|2215
5O61|1|A|G|2216
5O61|1|A|U|2217
5O61|1|A|C|2218

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14