IL_5O61_074

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5O61|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_074 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0998

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|C|1904
5O61|1|A|G|1905
5O61|1|A|U|1906
5O61|1|A|A|1907
5O61|1|A|A|1908
5O61|1|A|C|1909
*
5O61|1|A|G|1914
5O61|1|A|G|1915
5O61|1|A|A|1916
5O61|1|A|G|1917
5O61|1|A|A|1918
5O61|1|A|A|1919
5O61|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Conserved domain protein

Chain C

50S ribosomal protein L2