IL_5O61_078

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

5O61|1|A|A|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_078 not in the Motif Atlas

Homologous match to IL_9DFE_069

Geometric discrepancy: 0.1532

The information below is about IL_9DFE_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5O61|1|A|G|1987
5O61|1|A|C|1988
*
5O61|1|A|G|2204
5O61|1|A|A|2205
5O61|1|A|C|2206

Current chains

Chain A

23S rRNA

Nearby chains

Chain BB

Conserved domain protein

Chain C

50S ribosomal protein L2