IL_5O61_083

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_083 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.2029

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|U|2068
5O61|1|A|U|2069
5O61|1|A|A|2070
5O61|1|A|A|2071
5O61|1|A|G|2072
*
5O61|1|A|U|2111
5O61|1|A|U|2112
5O61|1|A|A|2113
5O61|1|A|A|2114
5O61|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains