IL_5O61_084

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_084 not in the Motif Atlas

Geometric match to IL_8P9A_451

Geometric discrepancy: 0.2908

The information below is about IL_8P9A_451

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5O61|1|A|A|2073
5O61|1|A|G|2074
5O61|1|A|G|2075
5O61|1|A|A|2076
5O61|1|A|C|2077
5O61|1|A|C|2078
*
5O61|1|A|G|2105
5O61|1|A|A|2106
5O61|1|A|G|2107
5O61|1|A|A|2108
5O61|1|A|A|2109
5O61|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains