IL_5O61_090

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

5O61|1|A|A|2663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_090 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.1084

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

5O61|1|A|G|2293
5O61|1|A|A|2294
*
5O61|1|A|U|2662
5O61|1|A|A|2663
5O61|1|A|C|2664
5O61|1|A|C|2665

Current chains

Chain A

23S rRNA

Nearby chains

Chain BW

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2