IL_5O61_094

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UUUGUGUAGGAUAGGUG*CACUCUGA

Length

25 nucleotides

Bulged bases

5O61|1|A|U|2334, 5O61|1|A|A|2337, 5O61|1|A|G|2338, 5O61|1|A|G|2339, 5O61|1|A|A|2340, 5O61|1|A|U|2341, 5O61|1|A|A|2342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_094 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.2496

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5O61|1|A|U|2330
5O61|1|A|U|2331
5O61|1|A|U|2332
5O61|1|A|G|2333
5O61|1|A|U|2334
5O61|1|A|G|2335
5O61|1|A|U|2336
5O61|1|A|A|2337
5O61|1|A|G|2338
5O61|1|A|G|2339
5O61|1|A|A|2340
5O61|1|A|U|2341
5O61|1|A|A|2342
5O61|1|A|G|2343
5O61|1|A|G|2344
5O61|1|A|U|2345
5O61|1|A|G|2346
*
5O61|1|A|C|2398
5O61|1|A|A|2399
5O61|1|A|C|2400
5O61|1|A|U|2401
5O61|1|A|C|2402
5O61|1|A|U|2403
5O61|1|A|G|2404
5O61|1|A|A|2405

Current chains

Chain A

23S rRNA

Nearby chains