IL_5O61_104

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

5O61|1|A|U|2715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_104 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.138

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5O61|1|A|A|2683
5O61|1|A|U|2684
5O61|1|A|C|2685
*
5O61|1|A|G|2713
5O61|1|A|G|2714
5O61|1|A|U|2715
5O61|1|A|U|2716
5O61|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain N

50S ribosomal protein L16