IL_5O61_108

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5O61|1|A|G|2800, 5O61|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_108 not in the Motif Atlas

Homologous match to IL_9DFE_097

Geometric discrepancy: 0.0833

The information below is about IL_9DFE_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5O61|1|A|C|2734
5O61|1|A|U|2735
5O61|1|A|C|2736
*
5O61|1|A|G|2798
5O61|1|A|C|2799
5O61|1|A|G|2800
5O61|1|A|A|2801
5O61|1|A|G|2802

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32