IL_5O61_145

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

5O61|1|BA|U|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_145 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2609

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5O61|1|BA|G|409
5O61|1|BA|G|410
5O61|1|BA|A|411
5O61|1|BA|U|412
5O61|1|BA|G|413
5O61|1|BA|A|414
5O61|1|BA|C|415
5O61|1|BA|G|416
*
5O61|1|BA|U|427
5O61|1|BA|G|428
5O61|1|BA|U|429
5O61|1|BA|A|430
5O61|1|BA|A|431
5O61|1|BA|A|432
5O61|1|BA|C|433

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4