IL_5O61_164

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5O61|1|BA|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5O61_164 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.0967

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5O61|1|BA|G|904
5O61|1|BA|A|905
*
5O61|1|BA|U|1376
5O61|1|BA|A|1377
5O61|1|BA|C|1378

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BB

Conserved domain protein

Chain BE

30S ribosomal protein S5